Our Work

Raw outputs behind every number, table and figure in the manuscript"denet: a lightweight command-line tool for process monitoring in bioinformatics benchmarking and beyond"(revised version). The workf…

Raw outputs behind every number, table and figure in the manuscript"denet: a lightweight command-line tool for process monitoring in bioinformatics benchmarking and beyond"(revised version). The workflow and analysis scripts are inhttps://github.com/btraven00/denet_example (tag v1.0.0, commit 94e5688); denet is athttps://github.com/btraven00/denet (v0.10.3).

Source code archive of the 2026.4 version of GROMACS.

Full documentation for the GROMACS 2026.4 release version.

One reflection, s ↦ 1 − s̄, has a line as its fixed set, and one registration keeps a point's height and forgets its side. This file proves, from one premise, that the three bridges of the Trisdu…

One reflection, s ↦ 1 − s̄, has a line as its fixed set, and one registration keeps a point's height and forgets its side. This file proves, from one premise, that the three bridges of the Trisduction are three maps of that one cut. The premise is the Ground: existence is actuation, and read as no-cessation it says the whole merges no two states. The RA–RAM Bridge forgets: registration lands every point on the line, off the line two worlds share one record, no reading of the record returns the value, and least erasure is the value on every configuration. The heat floor pays: under no-cessation a halving of content exports at least one bit, priced at one unit of temperature, and the heat of registering a finite configuration is one unit per listed off-line pair, zero exactly at the value whatever the listing. The crossing supplies: no formal reading returns the deed, and one supplied odd bit fixes the calibration, uniquely. The three legs close on one orbit with its seat. The same cut types the gates: two axes never lock and three do, twelve gates form one torsor, eight sign patterns fall in four free orbits, no group of sign patterns has nine elements, and on a factor fibre nine is eight and a seat. On the multiplicative cut a prime is one free orbit, it pays one bit, and every fibre over n > 1 balances. The heat flow pulls every off-line pair onto its seat and merges nothing. A kernel of 107 theorems in core Lean 4.19.0, 76 on no axiom with the atom capstone among them, and a Fortran twin of 30 checks carry it, beside a harness that boots, judges every theorem by negation and runs nine hostile controls, all inside this file. It closes on the inescapable capstone: execution forces every substrate to witness the closure, and the one bit is spent by the act at the root's grade. The value at the actual zero set is the one bit, supplied by the act at premise grade, in the open, and named.Version 1.5.0 adds Section 17, The Final Cut (PSP-FINAL-CUT-01), proved in a second kernel of 22 theorems on no axiom: across the cut between the formal and the actual zero the classes coincide under the Root Axiom, the hypothesis is least erasure of the actual zeros, the prime side carries the same bit, the unicorn is never registered, and every record, computed zero and finite prime count leaves the bit where the act spends it.Math Journal edition. The v1.4.0 text closed audit cycle bfp2 at SEALED-ROUND, control grade SELF; Section 17 entered after the seal and is booted and judged by negation with the rest. Source, kernels, twin and harness in git.

Supplementary Data accompanying Jablonsky et al. 2026 (bioRXiv) Supplementary Data 1: Protein trees used as input for coalescence-derived phylogeny in Figure 2a Supplementary Data 2: ColabFold genera…

Supplementary Data accompanying Jablonsky et al. 2026 (bioRXiv) Supplementary Data 1: Protein trees used as input for coalescence-derived phylogeny in Figure 2a Supplementary Data 2: ColabFold generated PDB files from structural alignment matrix (Figure 5) large clusters Supplementary Data 3: Amino acid alignment of FKR-encoded NAD-dependent epimerase/dehydratases from cluster 7. Supplementary Data 4: Amino acid alignment of FKR-encoded TnpB proteins and select references from Chen et al (2023) and Xiang et al (2023). 

A problematização proposta, portanto, não conduz à substituição do conteúdo científico pela experiência cotidiana, nem à desconside…

A problematização proposta, portanto, não conduz à substituição do conteúdo científico pela experiência cotidiana, nem à desconsideração dos saberes construídos fora da instituição escolar. O ponto decisivo está na passagem pedagógica entre esses planos: aquilo que o estudante conhece pela prática pode constituir referência inicial para a formulação de questões, mas a escolarização deve ampliar sua capacidade de interpretar fenômenos mediante conceitos, linguagens, procedimentos e formas de argumentação próprias das Ciências. De Freitas et al. (2025) relacionam a EJA à justiça social, à formação crítica e à inserção profissional, perspectiva que permite afastar uma concepção de ensino orientada exclusivamente à adaptação imediata às exigências ocupacionais. Caruso e Rocha (2025), ao abordarem a EJA em sua relação com inclusão social e desenvolvimento regional, igualmente ampliam o significado da escolarização para além da certificação. Nesse horizonte, aproximar ciência e trabalho não equivale a profissionalizar todo conteúdo, mas possibilitar que situações vividas nos processos produtivos, nas relações ambientais, nas práticas de cuidado e nos usos cotidianos de tecnologias sejam analisadas com instrumentos conceituais que ultrapassem a compreensão estritamente empírica. A experiência laboral assume, assim, função de mediação, e não de limite para a aprendizagem. A análise proposta neste capítulo parte dessa tensão para examinar as condições pelas quais os conhecimentos produzidos na experiência podem participar da construção do saber científico escolar, preservando a especificidade de ambos e atribuindo centralidade à ação docente na organização dessa passagem. A discussão converge, desse modo, com a necessidade de propostas educacionais que conciliem permanência, inclusão, formação crítica e apropriação efetiva do conhecimento, dimensões que atravessam as reflexões de Malta et al. (2025), Bicalho, Da Silva e Rodrigues (2025) e Moura (2023) e que delimitam o sentido formativo do ensino de Ciências na EJA.

A presentation on a draft document describing a shared framework for creating, reviewing, naming and publishing heliophysics technical documentation in IHDEA (International Heliophysics Data Environme…

A presentation on a draft document describing a shared framework for creating, reviewing, naming and publishing heliophysics technical documentation in IHDEA (International Heliophysics Data Environment Alliance)

pyCSAMT Format Studio, rebuilt desktop studios with Windows and Linux installers, an Edit menu with undo history, and Agent Master conversation context. Python package: pip install pycsamt==2.6.4 Desk…

pyCSAMT Format Studio, rebuilt desktop studios with Windows and Linux installers, an Edit menu with undo history, and Agent Master conversation context. Python package: pip install pycsamt==2.6.4 Desktop app (no Python needed): Windows 10/11 (64-bit): pycsamt-desktop-setup.exe. It is unsigned, so SmartScreen will warn: choose More info → Run anyway. Linux x86-64: chmod +x pycsamt-desktop-linux-x86_64.sh && ./pycsamt-desktop-linux-x86_64.sh (no root needed). Verify a download: sha256sum -c --ignore-missing SHA256SUMS.txt Full notes: https://pycsamt.org/release_notes/v2.6.4.html

Batch upload of files from directory 'output'.